The APAlog package tests the significance of differential poly A site usage for each transcript across samples. It is capable of testing differential poly A site usage through three statistical tests: a null hypothesis test, a reference-based test, and a pairwise test.
Click here to access APAlogProcesses 3’ sequencing data like Tag-Seq or QuantSeq, or standard RNA-seq reads mapped to annotated poly A sites.
Easily visualize the log fold change and p-values to identify significant hits.